EEB 401
Statistical phylogeographic modeling applications in Evolutionary Biology/Ecology
Winter Term 2014
Dr. L. Lacey Knowles
Monday 10am - 12:00pm lecture and 1 hour discussion (scheduled weekly per working group)
This course explores model-based approaches, and specifically the use of coalescent-based statistical phylogeographic methods, and their application in Evolutionary Biology/Ecology. With an emphasis on conceptual principles and generalizations, the primary goal of the course is to not only familiarize students with model-based statistical phylogeographic approaches, but also train students on how to generate hypotheses and translate them into models that can be tested with genomic data. The course will focus on phylogeographic applications in the research areas of biogeography, landscape genetics, comparative/community historical dynamics, adaptive evolution and speciation. Fundamental principles are discussed in relation to each topic and will include a review of active contemporary research and controversy.
Required readings will be posted in the Resources section of CTools site.
The class meets once a week, 10:10AM - 12:00 PM on Monday in XXXX. In addition, individual working group will meet weekly for 1 hour.
Class periods will include both lecture and discussion. Each week papers from the primary literature will be assigned for background reading and discussion. All students are expected to come to class prepared and to be active participants in all discussions. Grades are based on a class project (80 points) as well as participation (20 points). Participation points will be awarded based on contributions during class.
Working group projects will focus on phylogeographic applications in the research areas of biogeography, landscape genetics, comparative/community historical dynamics, adaptive evolution and speciation (which are all discussed in lectures). Each working group will be comprised of 5-7 students. Each working group will meet with Dr. Knowles weekly. Discussions with individual working groups will focus on instruction and review of analyses with an emphasis of alternative approaches and interpretation of results, as well as discussion of additional pertinent literature.
Office hours are by appointment and are best arranged via email; contact Dr. Knowles (knowlesl@umich.edu, Museum, room 2085) for appointments.
